Package: ciTools 0.6.1

ciTools: Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models

Functions to append confidence intervals, prediction intervals, and other quantities of interest to data frames. All appended quantities are for the response variable, after conditioning on the model and covariates. This package has a data frame first syntax that allows for easy piping. Currently supported models include (log-) linear, (log-) linear mixed, generalized linear models, generalized linear mixed models, and accelerated failure time models.

Authors:John Haman [cre, aut], Matthew Avery [aut], Institute for Defense Analyses [cph]

ciTools_0.6.1.tar.gz
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ciTools.pdf |ciTools.html✨
ciTools/json (API)

# Install 'ciTools' in R:
install.packages('ciTools', repos = c('https://jthaman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jthaman/citools/issues

On CRAN:

lme4modelingtidyverse

9.85 score 107 stars 5 packages 148 scripts 799 downloads 4 mentions 4 exports 33 dependencies

Last updated 1 years agofrom:c94d45c644. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winOKJan 28 2025
R-4.5-macOKJan 28 2025
R-4.5-linuxOKJan 28 2025
R-4.4-winOKJan 28 2025
R-4.4-macOKJan 28 2025
R-4.3-winOKJan 28 2025
R-4.3-macOKJan 28 2025

Exports:add_ciadd_piadd_probsadd_quantile

Dependencies:abindarmbootclicodadplyrfansigenericsgluelatticelifecyclelme4magrittrMASSMatrixminqanlmenloptrpillarpkgconfigR6rbibutilsRcppRcppEigenRdpackreformulasrlangsurvivaltibbletidyselectutf8vctrswithr

Accelerated Failure Time Models with ciTools

John Haman

Rendered fromciTools_survreg_vignette.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-10-22
Started: 2019-01-03

Binomial Regression with ciTools

Matthew Avery

Rendered fromciTools-binomial-vignette.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-08-17
Started: 2017-12-02

Generalized Linear Models with ciTools

John Haman

Rendered fromciTools-glm-vignette.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-08-17
Started: 2017-12-02

Introducing ciTools

John Haman and Matthew Avery

Rendered fromciTools-demo.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-10-22
Started: 2017-08-11

Mixed models with ciTools

Matthew Avery

Rendered fromcitools-merMod-vignette.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-08-17
Started: 2017-08-22

Readme and manuals

Help Manual

Help pageTopics
Add Confidence Intervals for Fitted Values to Data Framesadd_ci
Confidence Intervals for Generalized Linear Model Predictionsadd_ci.glm
Confidence Intervals for Generalized Linear Mixed Model Predictionsadd_ci.glmerMod
Confidence Intervals for Linear Model Predictionsadd_ci.lm
Confidence Intervals for Linear Mixed Model Predictionsadd_ci.lmerMod
Confidence Intervals for Negative Binomial Linear Model Predictionsadd_ci.negbin
Confidence Intervals for the Mean Survival Time of Accelerated Failure Time Models.add_ci.survreg
Add Prediction Intervals to Data Framesadd_pi
Prediction Intervals for Generalized Linear Modelsadd_pi.glm
Prediction Intervals for Generalized Linear Mixed Model Predictionsadd_pi.glmerMod
Prediction Intervals for Linear Model Predictionsadd_pi.lm
Prediction Intervals for Linear Mixed Model Fitted Valuesadd_pi.lmerMod
Prediction Intervals for Negative Binomial Linear Modelsadd_pi.negbin
Prediction Intervals for Accelerated Failure Time Modelsadd_pi.survreg
Add Regression Probabilities to Data Framesadd_probs
Response Probabilities for Generalized Linear Modelsadd_probs.glm
Response Probabilities for Generalized Linear Mixed Model Predictionsadd_probs.glmerMod
Response Level Probabilities for Linear Modelsadd_probs.lm
Response Probabilities for Linear Mixed Modelsadd_probs.lmerMod
Response Probabilities for Negative Binomial Modelsadd_probs.negbin
Confidence Intervals for the Survivor Function of Accelerated Failure Time Modelsadd_probs.survreg
Add Regression Quantiles to Data Framesadd_quantile
Quantiles for the Response of a Generalized Linear Modeladd_quantile.glm
Response Quantiles for Generalized Linear Mixed Model Predictionsadd_quantile.glmerMod
Quantiles for the Response of a Linear Modeladd_quantile.lm
Quantiles for the Response of a Linear Mixed Modeladd_quantile.lmerMod
Quantiles for the Response of a Negative Binomial Regressionadd_quantile.negbin
Confidence Intervals for Predicted Survival Time Quantiles of Accelerated Failure Time Modelsadd_quantile.survreg